PUBLICATIONS

Tang, Haibao, Vivek Krishnakumar, Xiaofei Zeng, Zhougeng Xu, Adam Taranto, Johnathan S. Lomas, Yixing Zhang, et al. n.d. ‘JCVI: A Versatile Toolkit for Comparative Genomics Analysis’. iMeta n/a (n/a): e211. https://doi.org/10.1002/imt2.211.

Zhai, Dong, Lu-Yi Zhang, Ling-Zi Li, Zhou-Geng Xu, Xiao-Li Liu, Guan-Dong Shang, Bo Zhao, Jian Gao, Fu-Xiang Wang, and Jia-Wei Wang. “Reciprocal Conversion between Annual and Polycarpic Perennial Flowering Behavior in the Brassicaceae.” Cell, May 2024. https://doi.org/10.1016/j.cell.2024.04.047.

Zhou, Chuan-Miao, Jian-Xu Li, Tian-Qi Zhang, Zhou-Geng Xu, Miao-Lian Ma, Peng Zhang, and Jia-Wei Wang. 2024. ‘The Structure of B-ARR Reveals the Molecular Basis of Transcriptional Activation by Cytokinin’. Proceedings of the National Academy of Sciences 121 (3): e2319335121. https://doi.org/10.1073/pnas.2319335121.

Wang, L., Wan, M.-C., Liao, R.-Y., Xu, J., Xu, Z.-G., Xue, H.-C., Mai, Y.-X., and Wang, J.-W. (2023). The maturation and aging trajectory of Marchantia polymorpha at single-cell resolution. Developmental Cell.

Hong-Bo Tang, Juan Wang, Long Wang, Guan-Dong Shang, Zhou-Geng Xu, Yan-Xia Mai, Ye-Tong Liu, Tian-Qi Zhang, Jia-Wei Wang, Anisotropic cell growth at the leaf base promotes age-related changes in leaf shape in Arabidopsis thaliana, The Plant Cell, 2023;, koad031, https://doi.org/10.1093/plcell/koad031

Li, LZ., Xu, ZG., Chang, TG. et al. Common evolutionary trajectory of short life-cycle in Brassicaceae ruderal weeds. Nat Commun 14, 290 (2023). https://doi.org/10.1038/s41467-023-35966-7

Shipeng Guo, Zhougeng Xu, Xiangjun Dong, Dongjie Hu, Yanshuang Jiang, Qunxian Wang, Jie Zhang, Qian Zhou, Shengchun Liu, Weihong Song, GPSAdb: a comprehensive web resource for interactive exploration of genetic perturbation RNA-seq datasets, Nucleic Acids Research, 2022;, gkac1066, https://doi.org/10.1093/nar/gkac1066

Li, Chen-Yi, Lei Yang, Yan Liu, Zhou-Geng Xu, Jian Gao, Yan-Bo Huang, Jing-Jing Xu, et al. 2022. ‘The Sage Genome Provides Insight into the Evolutionary Dynamics of Diterpene Biosynthesis Gene Cluster in Plants’. Cell Reports 40 (7). https://doi.org/10.1016/j.celrep.2022.111236.

Shang, GD., Xu, ZG., Wan, MC. et al. FindIT2: an R/Bioconductor package to identify influential transcription factor and targets based on multi-omics data. BMC Genomics 23, 272 (2022). https://doi.org/10.1186/s12864-022-08506-8

Gao, Jian, Ke Zhang, Ying-Juan Cheng, Sha Yu, Guan-Dong Shang, Fu-Xiang Wang, Lian-Yu Wu, Zhou-Geng Xu Yan-Xia Mai, Xin-Yan Zhao, Dong Zhai, Heng Lian and Jia-Wei Wang. ‘A Robust Mechanism for Resetting Juvenility during Each Generation in Arabidopsis’. Nature Plants 8, no. 3 (March 2022): 257–68. https://doi.org/10.1038/s41477-022-01110-4.

Wu, L.-Y., Shang, G.-D., Wang, F.-X., Gao, J., Wan, M.-C., Xu, Z.-G., and Wang, J.-W. (2022). Dynamic chromatin state profiling reveals regulatory roles of auxin and cytokinin in shoot regeneration. Developmental Cell.

Huang, K., Wu, X.-X., Fang, C.-L., Xu, Z.-G., Zhang, H.-W., Gao, J., Zhou, C.-M., You, L.-L., Gu, Z.-X., Mu, W.-H., et al. (2021). Pol IV and RDR2: A two-RNA-polymerase machine that produces double-stranded RNA. Science. https://www.science.org/doi/10.1126/science.abj9184

Cheng, Y.-J., Shang, G.-D., Xu, Z.-G., Yu, S., Wu, L.-Y., Zhai, D., Tian, S.-L., Gao, J., Wang, L., and Wang, J.-W. (2021). Cell division in the shoot apical meristem is a trigger for miR156 decline and vegetative phase transition in Arabidopsis. PNAS 118. https://doi.org/10.1073/pnas.2115667118

Fu-Xiang Wang, Guan-Dong Shang, Lian-Yu Wu, Yan-Xia Mai, Jian Gao, Zhou-Geng Xu, Jia-Wei Wang (2021). Protocol for assaying chromatin accessibility using ATAC-seq in plants. In: STAR Protocols, (2), 1, pp. 100289, https://doi.org/10.1016/j.xpro.2020.100289.

Bin-Bin Ye, Guan-Dong Shang, Yu Pan, Zhou-Geng Xu, Chuan-Miao Zhou, Ying-Bo Mao, Ning Bao, Lijun Sun, Tongda Xu, Jia-Wei Wang (2020). AP2/ERF Transcription Factors Integrate Age and Wound Signals for Root Regeneration. In: The Plant Cell, (32), 1, pp. 226–241, https://doi.org/10.1105/tpc.19.00378.

Fu-Xiang Wang, Guan-Dong Shang, Lian-Yu Wu, Zhou-Geng Xu, Xin-Yan Zhao, Jia-Wei Wang (2020). Chromatin Accessibility Dynamics and a Hierarchical Transcriptional Regulatory Network Structure for Plant Somatic Embryogenesis. In: Developmental Cell, (54), 6, pp. 742–757.e8, https://doi.org/10.1016/j.devcel.2020.07.003.

Tian-Qi Zhang, Zhou-Geng Xu, Guan-Dong Shang, Jia-Wei Wang (2019). A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root. In: Molecular Plant, (12), 5, pp. 648–660, https://doi.org/10.1016/j.molp.2019.04.004.